Tag: research

  • Organoids Part Two: Despite Limitations, They’re Still Amazing

    Clearly one article wasn’t enough to explore the full potential of organoids, so here we go again. This article won’t make much sense without reading the first but a quick catch up:
    Organoids are 3D cell structures grown from Stem cell samples and grown in nutrient rich gel.

    • They can better model human systems as they are more complex than their 2D counterparts and a better representation of human systems than animal models.
    • This advantage makes organoids uniquely beneficial to the field of drug research and testing and personalized medicine.
    • Link to original article if desired: https://2026.chargedmag.org/2026/04/organoids-what-are-they-and-why-theyre-amazing/

    Limitations
    These applications are not without limitations however. While organoids can replicate many aspects of human tissue, some specific cell genes are harder to find in organoids (Andrews and Kriegstein, 2022). This impaired the organoids’ ability to properly simulate the systems they are derived from, preventing researchers from properly modeling diseases and treatments in that area.

    Additionally, while developments have been made to improve organoid lifespans, organoids still require controlled environments and regular care to survive (Simian and Bissell, 2016). Even the longest lasting organoids, neurological models, have only survived a couple of years. Many organoids will even grow patches of dead tissue in the center due to a lack of oxygen hindering their research capabilities (Andrews & Kriegstein, 2022). In organic systems, cells are constantly interchanging molecules to maintain their functions and prevent necrosis. The nutritional gel can only do so much to get the molecules to cells at the interior of organoid structure without the natural systems to supply it.

    All of this causes organoid maintenance to be costly compared to in-vitro models, which are relatively cheap and easy to handle (Schutgens & Clevers, 2020). This stifles research leading to many knowledge gaps in the field. Furthermore, these restrictions limit modeling larger systems. Potential treatments tested in smaller organoids could have unpredictable impacts on a larger system when prescribed. Concerns around this limits applications of organoids, creating Theory-Application Voids.

    There are also many population gaps in organoid research as certain demographics are underrepresented in the stem cells used to create the organoids. These stem cells are often pulled from stem cell donor registries which have significant demographic, systemic, and behavioral biases. Further development into organoids and increased diversity in biobanks can increase organoid capabilities and applications.

    Concerns
    There are also current concerns surrounding organoid research that need to be addressed. While organoid models no longer rely on stem cells taken from embryos, they are still used in organoids modeling traditional embryo frameworks. These models use STEM cells to study the process of early embryonic development and can be very useful in identifying gestation concerns or potential risks to a fetus (Pereira et al., 2020). Once again, the line of when a zygote becomes a person however, gets blurry. Multiple public figures and many private citizens are debating if the creation of an embryo, even as a limited organoid, for study is ethical.

    There are also concerns about neurological organoid models used for neurological diseases (Lavazza and Massimini, 2018). Current models can only imitate parts of the human brain. However, as models more closely resemble a human brain with increased functionality, ethical questions surrounding the creation and experimentation of something than can think and feel will only grow. The line being living, sentient, and sapient is hard to discern, especially with limited structures that might not have the ability to communicate mental facilities.

    Future implementations of organoid models also raise ethical concerns regarding their financial exploitation and patient consent. People’s cell matter must be collected and added to databases to be used in organoid research (Bredenoord et al., 2017). Active patient involvement in organoid development is essential when considering this process. Their participation in cell donation must remain voluntary and properly compensated, and this is currently not guaranteed.

    The implementation of organoids in personalized medicine could also have complications on the healthcare system (Stefanicka-Wojtas & Kurpas, 2023). While organoids could improve personalized medicine, the increased specificity of treatments could lead to decreased procedure lifespans and certainty. The underrepresentation and price of organoid backed research could also exacerbate existing disparities in healthcare and lead to an increase in general healthcare costs or dropped plans due to cost-shifting (What’s Behind Rising Health Insurance Costs? | Johns Hopkins Bloomberg School of Public Health, 2025).

    Scientists in organoid research have repeatedly advocated for remaining cautious and careful in this relatively unexplored ethical field.

    Potential Applications
    Despite all of that dour news, organoids are still having a positive impact on millions of people with the potential to aid millions more. Unfortunately we only have time for two of these here: Regenerative Medicine and Transplantation.

    Regenerative Medicine is the field of science dedicated to the regeneration and restoration of human tissue based in Stem cells. Many different animals have regenerative properties from the regrowth and axolotl limbs to sea cucumbers regrowing internal organs to flatworms regrowing entire heads. Throughout history scientists have been inspired by these properties and researched the mechanisms behind them, leading to the field of regenerative medicine. While the study of artificial organs has been around since the 1930s, the modern idea of regenerative medicine centered around Stem cells started in the 1990s (Sampogna et al., 2015).

    As mentioned in my first article, the very purpose of Stem cells is to replace damaged, specialized cells. By comprehending the properties behind their functions, scientists can apply them to other areas. It is organoids that allow scientists to grow the cell cultures and tissue samples that are behind regenerative research. If someone has a large wound or damaged organ, an organoid of that structure could be applied and integrated into the person’s natural system. The organoid could be made from the person’s own cells, bypassing an immune response that comes with many non-biomaterials or transplants. This has already been proven promising. In one study, organoids made from the stem cells of mice suffering from inflammation and damage of their colon lining were successfully transferred onto the mice’s injured tissue. The cultured tissue covered the damage leading to a decrease in inflammation and harmful symptoms (Babak Arjmand et al., 2022). There are currently limitations, such as the delivery of nutrients mentioned above that directly challenge this field, but with more research scientists can find better ways for organoids to improve people’s lives through regenerative medicine.

    Transplantation is a great example of the applications of regenerative medicine. As mentioned above, tissues and cell cultures can be grown using organoids. This is not the extent of their potential however. As organoid research develops, scientists are working to make larger and more complex models. Through assembloids, the combinations of different types of organoid (a topic for a later article), lab made organs or entire organ systems could be created from a single stem cell. In 2025, scientists were able to successfully transplant pig kidneys made from organoids (SMC Spain, 2025). In the future organoids could be used to transplant an entire human heart or cardiovascular system. An even farther yet still plausible possibility would be the creation of entire limbs for transplants with scientists already researching limb organoids (Tsutsumi & Mototsugu Eiraku, 2023). Approximately 5,600 people in the U.S. die each year simply waiting for a transplant in addition to the 30% of recipients who die within 10 years of a transplant due to complications such as transplant rejection (What Are the Complications of Transplantation?, 2019). Organoids have the potential to prevent these deaths, and while there are still complications due to the price and longevity of organoids, they will only improve with continued exploration.

    Conclusion
    Organoids are amazing. They have the ability to impact almost every field of biomedical science and save millions of lives. While this article does take a much more nuanced look at organoids, diving into their limitations and complications, scientists are aware of these issues and taking careful approaches to research. Improvements in organoids, especially to their limitations, can only be made if research is supported and continued. There is still so much potential for organoids that we have only just scratched the surface of and so many more applications that we haven’t even considered yet. Organoids have even been proven to work with many other biomedical instruments and tools, aiding in their development as well. The possibilities are endless.

    Organoids are my passion, I’ve been interested in them for years now. Yet no one knew what I was going on and on about. I hope that these articles inspire curiosity and spread the wonders of organoids to others.

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    Works Cited:

    Title Image: Illustration created by Alexandra Marshall

    Andrews, M. G., & Kriegstein, A. R. (2022). Challenges of Organoid Research. Annual Review of Neuroscience, 45(1), 23–39. https://doi.org/10.1146/annurev-neuro-111020-090812

    Babak Arjmand, Rabbani, Z., Faezeh Soveyzi, Akram Tayanloo-Beik, Mostafa Rezaei-Tavirani, Mahmood Biglar, Adibi, H., & Bagher Larijani. (2022). Advancement of Organoid Technology in Regenerative Medicine. Regenerative Engineering and Translational Medicine, 9(1), 83–96. https://doi.org/10.1007/s40883-022-00271-0

    Bredenoord, A. L., Clevers, H., & Knoblich, J. A. (2017). Human tissues in a dish: The research and ethical implications of organoid technology. Science, 355(6322). https://doi.org/10.1126/science.aaf9414

    Lavazza, A., & Massimini, M. (2018). Cerebral organoids: ethical issues and consciousness assessment. Journal of Medical Ethics, 44(9), 606–610. https://doi.org/10.1136/medethics-2017-104555

    Pereira, A. M., Popovic, M., Dondorp, W. J., Bustos, M. T., Bredenoord, A. L., Chuva, S. M., Susanne, Roelen, B. A. J., Guido, & Björn Heindryckx. (2020). Modelling human embryogenesis: embryo-like structures spark ethical and policy debate. Human Reproduction Update, 26(6), 779–798. https://doi.org/10.1093/humupd/dmaa027

    Sampogna, G., Guraya, S. Y., & Forgione, A. (2015). Regenerative medicine: Historical roots and potential strategies in modern medicine. Journal of Microscopy and Ultrastructure, 3(3), 101–107. https://doi.org/10.1016/j.jmau.2015.05.002

    Spain, S. (2025, October 31). For the first time, pig kidneys modified with human renal organoids are transplanted into pigs. SMC España. https://sciencemediacentre.es/en/first-time-pig-kidneys-modified-human-renal-organoids-are-transplanted-pigs#:~:text=Pig%20kidneys%20modified%20with%20human%20renal%20organoids

    Schutgens, F., & Clevers, H. (2020). Human Organoids: Tools for Understanding Biology and Treating Diseases. Annual Review of Pathology: Mechanisms of Disease, 15(1), 211–234. https://doi.org/10.1146/annurev-pathmechdis-012419-032611

    Simian, M., & Bissell, M. J. (2016). Organoids: A historical perspective of thinking in three dimensions. The Journal of Cell Biology, 216(1), 31–40. https://doi.org/10.1083/jcb.201610056

    Stefanicka-Wojtas, D., & Kurpas, D. (2023). Personalised Medicine—Implementation to the Healthcare System in Europe (Focus Group Discussions). Journal of Personalized Medicine, 13(3), 380. https://doi.org/10.3390/jpm13030380

    Tsutsumi, R., & Mototsugu Eiraku. (2023). How might we build limbs in vitro informed by the modular aspects and tissue-dependency in limb development? Frontiers in Cell and Developmental Biology, 11, 1135784–1135784. https://doi.org/10.3389/fcell.2023.1135784

    What are the complications of transplantation? (2019, April). National Kidney Federation. https://www.kidney.org.uk/what-are-the-complications-of-transplantation#:~:text=Within%20one%20year%20of%20any,ten%20years%20after%20a%20transplant.

     

  • A day in the life of a field ecologist

    Details from my summer experience conducting fieldwork in the Colorado Rockies

    Photo caption: View of the Rocky Mountain Biological Laboratory, with Gothic Mountain towering above.

    4:30 AM: Good morning! To arrive at my research sites in time to start my bird species surveys by 6 AM, I often have to wake up long before the sun rises. I get dressed, refill my water bottles, collect the snacks and PB&J sandwiches I prepared the night before, and grab my pack. Inside my pack I have my binoculars, data collection sheets, a handheld GPS unit, and of course a first aid kit and extra warm layers. Field research requires that you always be prepared for the unexpected!

    This summer I am investigating how birds in the southern Rocky Mountains are responding to climate change. To do this, I am conducting a resurvey of bird species along an elevational gradient. I have six research sites ranging from 8,100-11,200ft in elevation, and I will visit each site three times throughout the season to conduct a point count survey of bird species. A point count survey involves standing in one spot for a specific amount of time and recording all bird species I observe by sight or sound. Another student conducted these surveys in 2011, so I am repeating their methods to be able to compare the data from 2011 and 2023 and examine how bird communities have changed over the 12-year period.

    6:00 AM: After biking 3 miles along a gravel road to the base of Snodgrass Mountain and hiking another 3 miles up the slope (including a break halfway to enjoy my PB&J for breakfast), I am ready to begin the point counts. I use the GPS unit to locate the coordinates of each survey point, and record all of the species that I hear and see during a five-minute period. These surveys require me to be very familiar with the songs and calls of bird species in the region, as the majority of my detections are auditory. I audio record all of my point counts so that I can go back and verify observations later if I am not certain about my real-time identification in the field. 

    8:00 AM: After I finish the point counts, I sit down to eat a snack and enjoy the beautiful views around me. I begin my bike ride down the mountain, whizzing through fields full of blooming wildflowers.

    Photo caption: Views of the sunrise and wildflowers from my trek up Snodgrass Mountain.

    9:30 AM: I make it back to my home for the summer: the Rocky Mountain Biological Laboratory (RMBL), a thriving community of almost 200 field biologists, each studying one component within the greater ecosystem of the southern Rocky Mountains, united with the goal of recording long-term ecosystem responses to climate change. I head to the dining hall to grab more snacks and refill my water—field work can be exhausting and it’s especially important to stay hydrated.

    10:00 AM: I head back to my cabin to enter my point count data from the morning. This involves transcribing my handwritten field notes on paper datasheets into a spreadsheet on my laptop. This is important for multiple reasons: it serves as a backup in case my paper datasheets are lost or damaged, and formatting an electronic file is the first step to performing statistical analyses to uncover trends and relationships in one’s data.

    11:00 AM: Now it’s naptime! With a wake-up call before sunrise, I almost always need a nap to recharge after morning fieldwork. 

    12:00 PM: I nap until lunchtime, and then I head down to the dining hall. RMBL has a great kitchen staff that makes sure the researchers are well fueled for their fieldwork, and the dining hall is a perfect place to meet other scientists and learn about all of the cool research taking place.

    1:00 PM: After lunch, I take some time to look over my research report draft and make some edits to the methods section because a couple of aspects have changed since I began my surveys out in the field. Keeping good records on the methods used for surveys and experiments is very important because it ensures future researchers will be able to reproduce the experiments.

    2:00 PM: Most afternoons, I work as part of the golden-mantled ground squirrel (GMGS) team on a long-term behavioral and spatial ecology project. This involves making rounds around the RMBL townsite looking for squirrels and recording their behavior in 10-minute periods. GMGS resemble chipmunks, but they are larger and can run faster. Another big component of the squirrel project is live trapping, where we bait small wire traps with peanut butter and place them around known squirrel territories. When we capture a squirrel, we put them into a special canvas bag for safe handling and we record morphological measurements such as weight and take hair samples for genetic analysis. The most exciting time is mid-summer when the squirrel pups emerge from their burrows. We try to trap pups every couple of weeks to monitor their growth.

    From left to right: A GMGS inside a trap, data collection during GMGS trapping.

    5:00 PM: After my shift with the squirrel team, I head back to my cabin to rest and relax until dinner. I also must pack up my camping gear, because the site I am surveying tomorrow morning is several miles up the valley from the field station, and it requires an overnight backpacking trip to get there. I pack a sleeping bag, sleeping pad, small 2-person tent, extra layers, water filter, and my survey equipment in a backpacking pack. At the dining hall during dinner, I will grab extra snacks and make a couple of PB&Js to carry with me. 

    7:00PM: After dinner, myself and two of my fellow student researchers borrow a vehicle to drive to the beginning of the hiking trail that will take us to the research site. We park next to a beautiful alpine lake and begin the 3-mile hike. We will gain 1500 ft in elevation over the course of the hike, so the majority of the trail is unrelentlessly steep. The gorgeous views of the sunset over the mountains around us serve as a good distraction from the strenuous hike. Two miles into the hike, we reach a river crossing. We take off our hiking boots and socks and roll up our pants to wade through the ice-cold water. Once across the river, we know there’s only a mile left to climb, and the sunlight is fading fast so we push onwards to try and make it to the site before dark.

    Once we get to the site, which consists of a series of ponds located along a rocky mountain slope, we quickly set up our tents and get ready for bed. The stars are incredible here—we can even see the outline of the milky way.

    Left: View of Emerald Lake from trail above. Right: Sunset over the valley after the river crossing.

    Photo caption: View down into the river valley at twilight.

    9:30PM: Time for bed! After the sun sets, it gets very cold at this high elevation, and the most comfortable place to be is inside my warm sleeping bag. I set my alarm for 5:30AM and make sure all of my survey equipment is ready for the morning.

    This summer I learned a lot about how to effectively design and conduct a field ecology research study—especially how to be flexible and creative when problems arise. Field research is challenging but it is so refreshing to work outside in such beautiful places, and it’s especially rewarding to explore the trends in one’s data after a season of hard work. That’s how I’ll be spending the winter months, as do many field ecologists outside of field season—crunching the numbers in order to reveal the mechanisms of change in the ecosystems around us.

  • POV: You are a Scientist Starting Research

    Imagine you are sitting in your lab, racking your brain over what research project to start next. You’ve hit a metaphorical “researcher’s block” and can’t come up with anything.

    This might actually be you one day in your professional career, or even in undergraduate personal research projects. Conducting research can be fun and super interesting, however, the beginning stages of coming up with a topic can sometimes feel tedious and frustrating. Hopefully, the steps below will help introduce this process and assist in making starting your own research easier.

    1. Find a subject –> chemistry, psychology, biology, physics, etc. 
      1. Research Areas and Topics | NORC.org
    2. Look up topics in your subject and pinpoint what is interesting to you 
    3. Look up existing research articles in your topic area and hone in on a more specific problem/question that hasn’t been answered yet 
      1. Or add on to existing research (same study with new population, same study with extra/new independent variable, etc.) 
        1. The best academic research databases [2022 update] – Paperpile
          1. Research Databases | EBSCO
          2. JSTOR Home
    4. Decide on a concrete research question 
      1. Operationally define your variables 
        1. Operational Definition – defining variables based on how they will be measured (be specific) 
          1. (3) operational definition – YouTube
      2. Decide if it is plausible with your current time and resources 
      3. Is it ethical? 
        1. What Is Ethics in Research & Why Is It Important? – by David B. Resnik, J.D., Ph.D. (nih.gov)
    5. Find more articles pertaining to your research question 
      1. Background information relating to your population, independent and dependent variables, etc. 
    6. Revise your question, if needed, after looking at more research 
    7. Lay out your methodology 
      1. Will you need any scales (existing or creating one)? 
        1. Types of Data & the Scales of Measurement | UNSW Online
      2. How will you reach out to participants (if needed)? 
        1. Participant Recruitment for Research | Digital Healthcare Research (ahrq.gov)
        2. Will you need to go through the International Review Board (IRB) — necessary when using human participants!
          1. IRB Review Process | Research Ethics & Compliance (umich.edu)
      3. Will you need any advanced equipment? 
    8. What is your hypothesis? 
      1. Make it simple, logical, falsifiable, testable, and positive 
        1. Logical – founded in existing research; follows logical argument 
        2. Falsifiable – must be possible to find results contrary to the hypothesis 
        3. Testable – variables must be measurable/observable 
        4. Positive – must be positive in that it establishes the existence of something (such as a relationship, difference, etc.) 
  • The Black Dot vs The Highlighter

    As college student, we have all had that one class that is required for graduation that we aren’t the most interested in. Most of us have a hard time retaining information for that particular subject. So, what would you consider the most effective way to retain the information you need to be successful throughout the course? There have been many research studies conducted on study habits and IMG_9773.JPG the effects a study habit has on the student’s ability to retain the information. Perhaps, the worst study habit a student can partake in is highlighting, and the best would be studying information in intervals along with adequate rest. But are these practices beneficial for a Georgia Tech Yellow Jacket? I decided to find out.

    Many students at GT are seen in class highlighting or using a bullet point method when taking notes, but which is the most beneficial and how do they affect the student’s ability to retain information if they are not interested in the subject matter? I’m sure any student at GT would agree that lectures are 50 to 75 minutes of information overload that result in sleepless nights to complete homework assignments. What if the reason we can’t retain the information is because of the way we organize the important aspects of the information given?

    IMG_9781.JPG I gave two GT students the same packet of information to learn over the course of two days. One student was instructed to highlight all the important information within the packet, and the other student was instructed to use the bullet point method. Exactly one week later, the two students were given an additional packet with new information to learn using their same methods of organizing the important information. At the end of week 2, the students were asked to provide as many facts as they could from packet one. Both students could recall a great sum of information, but the student who used a highlighter could only summarize. The student who used the bullet point method could recall more detailed information. When asked why he thought this may be the case, he said it was more repetition. He claimed that using the bullet point method allowed him to read, recite, determine what was important to remember, and write the information, and that made the information stick with him. Clearly, my two person study needs to be replicated, but in the meantime my advice to kick the highlighter to the curb and use the bullet point method.

    Dunlosky, J., Rawson, K. A., Marsh, E. J., Nathan, M. J., & Willingham, D. T. (2013). Improving students’ learning with effective learning techniques: Promising directions from cognitive and educational psychology. Psychological Science in the Public Interest, 14(1), 4-58.

    Photos by Rakiya Winton

  • Graph Paper: Taxes

    GraphPaper3

    Seriously, though, think about it: finding a quantitative way to understand and measure emotional responses in rats can be applied to better understand emotional disorders that millions of people suffer from every day.

    Giggling Rats:

    http://science.sciencemag.org/content/354/6313/757

    As far as putting ants on stilts, scientists were trying to determine whether ants counted their steps. Why is that important? Well… Reasons.

    Ants on Stilts:

    http://science.sciencemag.org/content/312/5782/1965